PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00941.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 225aa    MW: 24860.7 Da    PI: 4.5589
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00941.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-181868155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  Rsa1.0_00941.1_g00006.1 18 PVYRGVRMRR-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 68
                             68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-121868IPR001471AP2/ERF domain
SMARTSM003801.5E-341982IPR001471AP2/ERF domain
PROSITE profilePS5103222.9581976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-311977IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-211976IPR016177DNA-binding domain
CDDcd000183.77E-322078No hitNo description
PRINTSPR003676.4E-102031IPR001471AP2/ERF domain
PRINTSPR003676.4E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVDSSLGSDK KKKGNKQPVY RGVRMRRWGK WVSEIREPRK KSRIWLGTFP TAEMAMRAHD  60
VAALSIKGTS AILNFPELSD LLPRPASLSP RDVRAAATKA ALMEFGATAF CQESETNGIV  120
ASESEGNETA ASSIRSDSET SETASFSATS IDEESTVSDN LDKIVELPSL GTSLDESNEF  180
VFFDSLEDLV YIPPWLHSGM EDGFTYNNDS PFKVCEESFS WNHFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-162076360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626957.11e-144PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0804e-96ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0D3BLR51e-144A0A0D3BLR5_BRAOL; Uncharacterized protein
STRINGBra034535.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-91ERF family protein